Package mcl

• clm(1) — perform various computations on graphs and clusterings
• clmclose(1) — Fetch connected components from graphs or subgraphs
• clmdist(1) — compute the distance between two or more partitions (clusterings).
• clmformat(1) — display cluster results in readable form
• clmimac(1) — Interpret Matrices (c.q. MCL iterands output by mcl) As Clusterings.
• clminfo(1) — Compute performance measures for graphs and clusterings.
• clmmate(1) — compute best matches between two clusterings
• clmmeet(1) — compute the intersection of a set of clusterings.
• clmorder(1) — reorder indices to represent blocks from different clusterings.
• clmresidue(1) — extend clustering of subgraph to clustering of graph.
• clmvol(1) — compute volatile nodes from a set of clusterings
• mcl(1) — The Markov Cluster Algorithm, aka the MCL algorithm.
• mclcm(1) — hierarchical clustering of graphs with mcl
• mclfamily(7) — a description of the mcl family of cluster applications.
• mclfaq(7) — faqs and facts about the MCL cluster algorithm.
• mclindex(7) — a list of the utilities and modules present in the MCL distribution.
• mclpipeline(1) — a generic pipeline for generating and scrutinizing mcl clusterings.
• mcx(1) — perform various computations on graphs and matrices
• mcxarray(1) — Transform array data to MCL matrices
• mcxassemble(1) — transform raw cooccurrence data to mcl matrix format.
• mcxclcf(1) — compute the clustering coefficient of a graph
• mcxconvert(1) — convert between mcx storage types
• mcxctty(1) — compute the clustering coefficient of a graph
• mcxdiameter(1) — compute the diameter of a graph
• mcxdump(1) — dump matrices, optionally map indices to labels
• mcxi(1) — a stack language interpreter for interaction with the mcl libraries.
• mcxio(5) — the format specifications for input and output in the mcl family.
• mcxload(1) — load matrices and tab files from label format
• mcxmap(1) — permute or remap the indices of graphs and matrices.
• mcxq(1) — compute simple graph statistics
• mcxrand(1) — random shuffling, removal, addition, and perturbation of edges of graphs
• mcxsubs(1) — extract submatrices (subgraphs) of a matrix (graph).
• tingea.log(7) — How to set the Tingea log parameters